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CSM1 similar to CSM1 Chromosome segregation in meiosis [ Scheffersomyces stipitis CBS 6054 ]

Gene ID: 4852042, updated on 21-Dec-2023

Summary

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Gene symbol
CSM1
Gene description
similar to CSM1 Chromosome segregation in meiosis
Locus tag
PICST_66746
Gene type
protein coding
RNA name
CSM1-like protein
RefSeq status
PROVISIONAL
Organism
Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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Genomic context

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See CSM1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_009068.1 (3480360..3481714)

Chromosome 1 - NC_009068.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent DNA helicase HMI1, mitochondrial precursor Neighboring gene regulator of Ty1 Transposition Neighboring gene hypothetical protein Neighboring gene Cytochrome oxidase assembly

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule site clamp IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in attachment of mitotic spindle microtubules to kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homologous chromosome segregation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in meiotic sister chromatid segregation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome, centromeric core domain IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitotic spindle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of monopolin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
similar to CSM1 Chromosome segregation in meiosis
Names
CSM1-like protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009068.1 Reference assembly

    Range
    3480360..3481714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001386963.1 → XP_001387000.1  CSM1-like protein [Scheffersomyces stipitis CBS 6054]

    See identical proteins and their annotated locations for XP_001387000.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A3GIE3
    Conserved Domains (1) summary
    pfam12539
    Location:215 → 315
    Csm1; Chromosome segregation protein Csm1/Pcs1
Nucleotide Protein
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