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PICST_39662 fungal transcriptional regulatory protein [ Scheffersomyces stipitis CBS 6054 ]

Gene ID: 4852050, updated on 21-Dec-2023

Summary

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Gene symbol
PICST_39662
Gene description
fungal transcriptional regulatory protein
Locus tag
PICST_39662
Gene type
protein coding
RNA name
fungal transcriptional regulatory protein
RefSeq status
PROVISIONAL
Organism
Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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Genomic context

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See PICST_39662 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_009068.1 (3505939..3508131)

Chromosome 1 - NC_009068.1Genomic Context describing neighboring genes Neighboring gene Sorbitol dehydrogenase (L-iditol 2-dehydrogenase) Neighboring gene Dihydroxyacetone synthase (DHAS) (TKL2) (Formaldehyde transketolase) (Glycerone synthase)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
fungal transcriptional regulatory protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009068.1 Reference assembly

    Range
    3505939..3508131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001386966.1 → XP_001387003.2  fungal transcriptional regulatory protein [Scheffersomyces stipitis CBS 6054]

    See identical proteins and their annotated locations for XP_001387003.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A3GIF1
    Conserved Domains (2) summary
    smart00066
    Location:10 → 48
    GAL4; GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain
    cl23766
    Location:240 → 571
    fungal_TF_MHR; fungal transcription factor regulatory middle homology region
Nucleotide Protein
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