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fut9b.1 fucosyltransferase 9b, tandem duplicate 1 [ Danio rerio (zebrafish) ]

Gene ID: 492813, updated on 4-Jan-2025

Summary

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Official Symbol
fut9b.1provided by ZNC
Official Full Name
fucosyltransferase 9b, tandem duplicate 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-9925
See related
Ensembl:ENSDARG00000067524 AllianceGenome:ZFIN:ZDB-GENE-030131-9925
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cb66; fut9; fut9b; sb:cb66; zgc:101612
Summary
Predicted to enable alpha-(1->3)-fucosyltransferase activity. Predicted to be involved in fucosylation. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in Golgi cisterna membrane and Golgi membrane. Is expressed in EVL; hypothalamus; periderm; and sensory system. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See fut9b.1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (3307765..3413237, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (3249003..3354488, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103911458 Neighboring gene uncharacterized LOC137496324 Neighboring gene fucosyltransferase 9b, tandem duplicate 2 Neighboring gene fucosyltransferase 9b, tandem duplicate 3 Neighboring gene fucosyltransferase 9b, tandem duplicate 6 Neighboring gene fucosyltransferase 9b, tandem duplicate 4 Neighboring gene fucosyltransferase 9b, tandem duplicate 5 Neighboring gene cytosolic thiouridylase subunit 1 homolog (S. pombe) Neighboring gene paxillin b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. En bloc duplications, mutation rates, and densities of amino acid changes clarify the evolution of vertebrate alpha-1,3/4-fucosyltransferases. Petit D, et al. J Mol Evol, 2006 Sep. PMID 16927008
  2. Metabolic labeling of fucosylated glycans in developing zebrafish. Dehnert KW, et al. ACS Chem Biol, 2011 Jun 17. PMID 21425872, Free PMC Article
  3. Neuroepithelial cells require fucosylated glycans to guide the migration of vagus motor neuron progenitors in the developing zebrafish hindbrain. Ohata S, et al. Development, 2009 May. PMID 19369395
  4. Treatment with a DNA methyltransferase inhibitor feminizes zebrafish and induces long-term expression changes in the gonads. Ribas L, et al. Epigenetics Chromatin, 2017 Dec 8. PMID 29216900, Free PMC Article
  5. Mapping the expressed glycome and glycosyltransferases of zebrafish liver cells as a relevant model system for glycosylation studies. Vanbeselaere J, et al. J Proteome Res, 2012 Apr 6. PMID 22352757

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables alpha-(1->3)-fucosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in fucosylation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
alpha-(1,3)-fucosyltransferase 9b
Names
alpha-1,3-fucosyltransferase 9B
fucosyltransferase 9
fucosyltransferase 9b
NP_001007455.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007454.2 → NP_001007455.2  alpha-(1,3)-fucosyltransferase 9b

    Status: VALIDATED

    Source sequence(s)
    CU467877, CU929199
    UniProtKB/TrEMBL
    Q5U3V0
    Related
    ENSDARP00000131207.1, ENSDART00000170478.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    3307765..3413237 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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