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Zfp62 zinc finger protein 62 [ Rattus norvegicus (Norway rat) ]

Gene ID: 497894, updated on 4-Jan-2025

Summary

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Official Symbol
Zfp62provided by RGD
Official Full Name
zinc finger protein 62provided by RGD
Primary source
RGD:1560191
See related
AllianceGenome:RGD:1560191
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1560191
Summary
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZFP62 (ZFP62 zinc finger protein). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Thymus (RPKM 109.8), Spleen (RPKM 87.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Zfp62 in Genome Data Viewer
Location:
10q21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (34019367..34040564)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (33522618..33539446)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (34477108..34493941)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120095085 Neighboring gene olfactory receptor family 2 subfamily M member 13 Neighboring gene butyrophilin-like 9 Neighboring gene uncharacterized LOC134480779 Neighboring gene alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase Neighboring gene olfactory receptor family 2 subfamily Y member 1G

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 62 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    34019367..34040564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039087164.2 → XP_038943092.1  zinc finger protein 62 homolog isoform X1

    UniProtKB/TrEMBL
    A0A0G2K5I8
    Conserved Domains (3) summary
    COG5048
    Location:447 → 860
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:389 → 468
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:227 → 247
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_006246188.5 → XP_006246250.1  zinc finger protein 62 homolog isoform X1

    See identical proteins and their annotated locations for XP_006246250.1

    UniProtKB/TrEMBL
    A0A0G2K5I8
    Conserved Domains (3) summary
    COG5048
    Location:447 → 860
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:389 → 468
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:227 → 247
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_006246189.5 → XP_006246251.1  zinc finger protein 62 homolog isoform X2

    See identical proteins and their annotated locations for XP_006246251.1

    UniProtKB/TrEMBL
    A0A0G2K5I8
    Conserved Domains (3) summary
    COG5048
    Location:447 → 860
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:389 → 468
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:227 → 247
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_039087165.1 → XP_038943093.1  zinc finger protein 62 homolog isoform X1

    UniProtKB/TrEMBL
    A0A0G2K5I8
    Conserved Domains (3) summary
    COG5048
    Location:447 → 860
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:389 → 468
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:227 → 247
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. XM_063270096.1 → XP_063126166.1  zinc finger protein 62 homolog isoform X1

    UniProtKB/TrEMBL
    A0A0G2K5I8
Nucleotide Protein Strain
Heading Accession and Version

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