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Golt1a golgi transport 1A [ Rattus norvegicus (Norway rat) ]

Gene ID: 498230, updated on 27-Nov-2024

Summary

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Official Symbol
Golt1aprovided by RGD
Official Full Name
golgi transport 1Aprovided by RGD
Primary source
RGD:1566310
See related
EnsemblRapid:ENSRNOG00000002936 AllianceGenome:RGD:1566310
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1566310
Summary
Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and retrograde transport, endosome to Golgi. Predicted to be located in Golgi cis cisterna; nuclear envelope; and trans-Golgi network. Predicted to be active in endoplasmic reticulum and membrane. Orthologous to human GOLT1A (golgi transport 1A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Liver (RPKM 90.5) and Kidney (RPKM 41.1) See more
Orthologs
human mouse all
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Genomic context

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See Golt1a in Genome Data Viewer
Location:
13q13
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (47312412..47325176)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (44760356..44773123)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (50532116..50550029, complement)

Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 15B Neighboring gene pleckstrin homology domain containing A6 Neighboring gene KiSS-1 metastasis-suppressor Neighboring gene uncharacterized LOC102550525 Neighboring gene renin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Got1p and Sft2p: membrane proteins involved in traffic to the Golgi complex. Conchon S, et al. EMBO J, 1999 Jul 15. PMID 10406798, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi cis cisterna ISO
Inferred from Sequence Orthology
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
  
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nuclear envelope ISO
Inferred from Sequence Orthology
more info
  
located_in trans-Golgi network ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
vesicle transport protein GOT1A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109070.1 → NP_001102540.1  vesicle transport protein GOT1A

    See identical proteins and their annotated locations for NP_001102540.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473958
    UniProtKB/TrEMBL
    A6IC72, D3ZFB0
    Related
    ENSRNOP00000003918.5, ENSRNOT00000003918.7
    Conserved Domains (1) summary
    cl02130
    Location:4 → 109
    Got1; Got1/Sft2-like family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086031.1 Reference GRCr8

    Range
    47312412..47325176
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017598877.2 → XP_017454366.1  vesicle transport protein GOT1A isoform X1

    UniProtKB/TrEMBL
    A6IC72, D3ZFB0
    Conserved Domains (1) summary
    cl02130
    Location:4 → 109
    Got1; Got1/Sft2-like family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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