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Fam167a family with sequence similarity 167, member A [ Rattus norvegicus (Norway rat) ]

Gene ID: 498533, updated on 27-Nov-2024

Summary

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Official Symbol
Fam167aprovided by RGD
Official Full Name
family with sequence similarity 167, member Aprovided by RGD
Primary source
RGD:1561302
See related
EnsemblRapid:ENSRNOG00000011316 AllianceGenome:RGD:1561302
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1561302
Summary
Orthologous to human FAM167A (family with sequence similarity 167 member A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 28.2), Lung (RPKM 26.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Fam167a in Genome Data Viewer
Location:
15p12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (41861271..41891427)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (37685221..37715472)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (46613761..46643771)

Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120097012 Neighboring gene BLK proto-oncogene, Src family tyrosine kinase Neighboring gene uncharacterized LOC120097013 Neighboring gene L-threonine dehydrogenase Neighboring gene myotubularin related protein 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein FAM167A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109102.2 → NP_001102572.1  protein FAM167A

    See identical proteins and their annotated locations for NP_001102572.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000015
    UniProtKB/TrEMBL
    A6K6G2, D3ZQX1
    Conserved Domains (1) summary
    pfam11652
    Location:131 → 215
    DUF3259; Protein of unknown function (DUF3259)

  2. NM_001434438.1 → NP_001421367.1  protein FAM167A

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000015

RNA

  1. NR_197786.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000015

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086033.1 Reference GRCr8

    Range
    41861271..41891427
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008770771.4 → XP_008768993.1  protein FAM167A isoform X1

    UniProtKB/TrEMBL
    A6K6G2, D3ZQX1
    Related
    ENSRNOP00000015055.2, ENSRNOT00000015055.6
    Conserved Domains (1) summary
    pfam11652
    Location:131 → 215
    DUF3259; Protein of unknown function (DUF3259)

  2. XM_063274553.1 → XP_063130623.1  protein FAM167A isoform X2

  3. XM_063274552.1 → XP_063130622.1  protein FAM167A isoform X1

    UniProtKB/TrEMBL
    A6K6G2, D3ZQX1
Nucleotide Protein Strain
Heading Accession and Version

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