Spata2L spermatogenesis associated 2-like [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Spata2Lprovided by RGD
Official Full Name: spermatogenesis associated 2-likeprovided by RGD
Primary source: RGD:1560840
See related: EnsemblRapid:ENSRNOG00000016167 AllianceGenome:RGD:1560840
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1560840
Summary: Predicted to be active in cytoplasm. Orthologous to human SPATA2L (spermatogenesis associated 2 like). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Brain (RPKM 53.0), Kidney (RPKM 37.5) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 19q12

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	19	NC_086037.1 (68177599..68182122, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	19	NC_051354.1 (51269078..51273605, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	19	NC_005118.4 (56032607..56037873, complement)

Chromosome 19 - NC_086037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH141043 (e-PCR)
- UniSTS:223043

RH143593 (e-PCR)
- UniSTS:232839

Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: spermatogenesis-associated protein 2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001109133.2 → NP_001102603.1 spermatogenesis-associated protein 2-like protein

See identical proteins and their annotated locations for NP_001102603.1

Status: VALIDATED

Source sequence(s)

JAXUCZ010000019

UniProtKB/TrEMBL

A6IZX2, D4A9H7

Related

ENSRNOP00000021968.3, ENSRNOT00000021968.6

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086037.1 Reference GRCr8

Range

68177599..68182122 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006255781.4 → XP_006255843.1 spermatogenesis-associated protein 2-like protein isoform X1

UniProtKB/TrEMBL

A6IZX2, D4A9H7
XM_039097938.2 → XP_038953866.1 spermatogenesis-associated protein 2-like protein isoform X2