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Zfp94 zinc finger protein 94 [ Rattus norvegicus (Norway rat) ]

Gene ID: 499095, updated on 4-Jan-2025

Summary

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Symbol
Zfp94provided by RGD
Full Name
zinc finger protein 94provided by RGD
Primary source
RGD:1560430
See related
EnsemblRapid:ENSRNOG00000065649 AllianceGenome:RGD:1560430
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable metal ion binding activity. Predicted to be located in nucleoplasm. [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Brain (RPKM 27.3), Kidney (RPKM 26.3) and 9 other tissues See more
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Genomic context

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See Zfp94 in Genome Data Viewer
Location:
1q21
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (88986094..89007584, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (79858188..79879702, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (81137495..81152458, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 108 Neighboring gene intraflagellar transport protein 81 homolog Neighboring gene zinc finger protein 61 Neighboring gene uncharacterized LOC103691053 Neighboring gene zinc finger protein 94 like 1 Neighboring gene tescalcin-like Neighboring gene Ly6/Plaur domain containing 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Analysis of homologous XRCC1-linked zinc-finger gene families in human and mouse: evidence for orthologous genes. Shannon M, et al. Genomics, 1998 Apr 1. PMID 9570955
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC114501

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 94

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037212.2 → NP_001032289.2  zinc finger protein 94

    See identical proteins and their annotated locations for NP_001032289.2

    Status: VALIDATED

    Source sequence(s)
    BC108299
    UniProtKB/TrEMBL
    F1M973, Q32P35
    Conserved Domains (4) summary
    COG5048
    Location:218 → 417
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:381 → 401
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:1 → 42
    KRAB; KRAB box
    pfam13465
    Location:421 → 445
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    88986094..89007584 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039087102.2 → XP_038943030.1  zinc finger protein 94 isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:218 → 417
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:381 → 401
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:1 → 42
    KRAB; KRAB box
    pfam13465
    Location:421 → 445
    zf-H2C2_2; Zinc-finger double domain

  2. XM_063270846.1 → XP_063126916.1  zinc finger protein 94 isoform X2

  3. XM_063270845.1 → XP_063126915.1  zinc finger protein 94 isoform X2

  4. XM_063270844.1 → XP_063126914.1  zinc finger protein 94 isoform X2

  5. XM_063270841.1 → XP_063126911.1  zinc finger protein 94 isoform X1

  6. XM_039087099.2 → XP_038943027.1  zinc finger protein 94 isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:218 → 417
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:381 → 401
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:1 → 42
    KRAB; KRAB box
    pfam13465
    Location:421 → 445
    zf-H2C2_2; Zinc-finger double domain

  7. XM_063270843.1 → XP_063126913.1  zinc finger protein 94 isoform X1

  8. XM_039087095.2 → XP_038943023.2  zinc finger protein 94 isoform X1

    Related
    ENSRNOP00000026264.6, ENSRNOT00000026263.7
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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