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Cdv3l1 carnitine deficiency-associated gene expressed in ventricle 3 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 499235, updated on 4-Jan-2025

Summary

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Official Symbol
Cdv3l1provided by RGD
Official Full Name
carnitine deficiency-associated gene expressed in ventricle 3 like 1provided by RGD
Primary source
RGD:1565730
See related
EnsemblRapid:ENSRNOG00000086256 AllianceGenome:RGD:1565730
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Cdv3
Summary
Orthologous to human CDV3 (CDV3 homolog). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Thymus (RPKM 524.1), Heart (RPKM 334.1) and 9 other tissues See more
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Genomic context

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See Cdv3l1 in Genome Data Viewer
Location:
1q33
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (171091997..171093311, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (161678311..161681564, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (171996406..171997611, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene olfactomedin-like 1 Neighboring gene PPFIA binding protein 2 Neighboring gene cytochrome b5 reductase 2 Neighboring gene ovochymase 2 Neighboring gene olfactory receptor family 5 subfamily P member 5B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The role of Sp1 and AP-2 in basal and protein kinase A--induced expression of mitochondrial serine:pyruvate aminotransferase in hepatocytes. Uchida C, et al. J Biol Chem, 2002 Oct 18. PMID 12169688
  2. Transcription factor AP-2 interacts with the SUMO-conjugating enzyme UBC9 and is sumolated in vivo. Eloranta JJ, et al. J Biol Chem, 2002 Aug 23. PMID 12072434
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
Cdv3 protein; protein CDV3
Names
LRRGT00141

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    171091997..171093311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_574528.8 → XP_574528.1  protein CDV3

    See identical proteins and their annotated locations for XP_574528.1

    UniProtKB/TrEMBL
    Q6QI67
    Related
    ENSRNOP00000109409.1, ENSRNOT00000135215.1
    Conserved Domains (1) summary
    pfam15359
    Location:30 → 101
    CDV3; Carnitine deficiency-associated protein 3
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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