U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Knop1 lysine-rich nucleolar protein 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 499255, updated on 9-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
Knop1provided by RGD
Official Full Name
lysine-rich nucleolar protein 1provided by RGD
Primary source
RGD:1565096
See related
EnsemblRapid:ENSRNOG00000070112 AllianceGenome:RGD:1565096
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565096
Summary
Orthologous to human KNOP1 (lysine rich nucleolar protein 1). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Thymus (RPKM 96.2), Spleen (RPKM 84.6) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Knop1 in Genome Data Viewer
Location:
1q35
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (182611758..182630610, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (173180400..173199253, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (188566964..188571954, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene centriolar coiled-coil protein 110 Neighboring gene VPS35 endosomal protein sorting factor like Neighboring gene small nucleolar RNA SNORA24 Neighboring gene small nucleolar RNA SNORA44 Neighboring gene IQ motif containing K Neighboring gene uncharacterized LOC134485172

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Castello A, et al. Cell, 2012 Jun 8. PMID 22658674

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

General protein information

Go to the top of the page Help
Preferred Names
lysine-rich nucleolar protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001399775.1 → NP_001386704.1  lysine-rich nucleolar protein 1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A8I6AUQ0
    Related
    ENSRNOP00000097660.1, ENSRNOT00000096905.2

  2. NM_001399776.1 → NP_001386705.1  lysine-rich nucleolar protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A8I6AUQ0
    Related
    ENSRNOP00000076425.2, ENSRNOT00000118077.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    182611758..182630610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039087781.2 → XP_038943709.1  lysine-rich nucleolar protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AUQ0
    Conserved Domains (1) summary
    pfam15477
    Location:367 → 440
    SMAP; Small acidic protein family

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001134611.2: Suppressed sequence

    Description
    NM_001134611.2: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools