RGD1564887 similar to 9130011E15Rik protein [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: RGD1564887provided by RGD
Official Full Name: similar to 9130011E15Rik proteinprovided by RGD
Primary source: RGD:1564887
Gene type: protein coding
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Annotation information: Note: RGD1564887 (GeneID: 499363) appears to be a duplicate placement of C1H10orf76 (GeneID: 103689959) on Rnor_6.0 that is not present on Rn_Celera (Annotation Release 105) and not supported by synteny in mouse and human. Additionally, gene neighbor LOC100911951 appears to be a duplicate placement of Kcnip2 (Gene ID: 56817). BLASTing RGD1564887 XM_008760484.1 and C1H10orf76 XM_001058595.3 against the rat genome shows best hits to NC_005100.4 on Rnor_6.0 at locations where RGD1564887 and C1H10orf76 are annotated and to AC_000069.1 on Rn_Celera only at location where C1H10orf76 is annotated (Annotation Release 105). 2-sequence BLAST of RGD1564887 XM_008760484.1 against C1H10orf76 XM_001058595.3 shows high sequence identity (81% coverage, 100% identity). BLASTing RGD1564887 underlying component AABR07006889.1 against the rat genome shows best hits to NC_005100.4 on Rnor_6.0 at the location where RGD1564887 is annotated (hitting itself) and the location where C1H10orf76 is annotated. 2-sequence BLAST of RGD1564887 underlying component AABR07006889.1 against C1H10orf76 underlying component AC093941.13 shows 99% sequence identity across ~44 kb. [26 Mar 2015]
Expression: Biased expression in Muscle (RPKM 48.7), Kidney (RPKM 48.0) and 9 other tissues See more
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Genomic context

Location:: 1q54

Annotation release	Status	Assembly	Chr	Location
106	latest, but not current	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (262861241..262891231)

Expression

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Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016