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Fibin fin bud initiation factor homolog [ Rattus norvegicus (Norway rat) ]

Gene ID: 499856, updated on 27-Nov-2024

Summary

Official Symbol
Fibinprovided by RGD
Official Full Name
fin bud initiation factor homologprovided by RGD
Primary source
RGD:1563711
See related
EnsemblRapid:ENSRNOG00000073909 AllianceGenome:RGD:1563711
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable protein homodimerization activity. Predicted to be involved in protein kinase C signaling; response to dexamethasone; and response to manganese ion. Predicted to be located in endoplasmic reticulum. Orthologous to human FIBIN (fin bud initiation factor homolog). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See Fibin in Genome Data Viewer
Location:
3q34
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (117396973..117399244, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (96942405..96944676, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (101545207..101547478, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486420 Neighboring gene uncharacterized LOC120101622 Neighboring gene gamma-butyrobetaine hydroxylase 1 Neighboring gene solute carrier family 5 member 12 Neighboring gene anoctamin 3 Neighboring gene mucin 15, cell surface associated

Genomic regions, transcripts, and products

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
fin bud initiation factor homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025042.2NP_001020213.1  fin bud initiation factor homolog precursor

    See identical proteins and their annotated locations for NP_001020213.1

    Status: VALIDATED

    Source sequence(s)
    BC085873, CK364593
    UniProtKB/Swiss-Prot
    Q5U2T4
    Related
    ENSRNOP00000102678.1, ENSRNOT00000143706.1
    Conserved Domains (1) summary
    pfam15819
    Location:15209
    Fibin; Fin bud initiation factor homologue

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    117396973..117399244 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)