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Dnaaf9 dynein axonemal assembly factor 9 [ Rattus norvegicus (Norway rat) ]

Gene ID: 499891, updated on 4-Jan-2025

Summary

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Official Symbol
Dnaaf9provided by RGD
Official Full Name
dynein axonemal assembly factor 9provided by RGD
Primary source
RGD:1565616
See related
EnsemblRapid:ENSRNOG00000021237 AllianceGenome:RGD:1565616
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565616
Summary
Orthologous to human DNAAF9 (dynein axonemal assembly factor 9). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Kidney (RPKM 147.3), Brain (RPKM 143.5) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Dnaaf9 in Genome Data Viewer
Location:
3q36
Exon count:
40
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (138370971..138505711, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (117918047..118052641, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (123243873..123376458, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene inosine triphosphatase Neighboring gene solute carrier family 4 member 11 Neighboring gene RNA, U6 small nuclear 45 Neighboring gene U6 spliceosomal RNA Neighboring gene glutathione S-transferase alpha 4, pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
dynein axonemal assembly factor 9
Names
uncharacterized protein C20orf194 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109206.1 → NP_001102676.1  dynein axonemal assembly factor 9

    See identical proteins and their annotated locations for NP_001102676.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473949
    UniProtKB/TrEMBL
    A0A8I6AF68, A6HQB0, D3ZVN5
    Related
    ENSRNOP00000028842.5, ENSRNOT00000028842.8

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    138370971..138505711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039105694.2 → XP_038961622.1  dynein axonemal assembly factor 9 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AF68
    Related
    ENSRNOP00000110298.1, ENSRNOT00000137335.1

  2. XM_017591986.3 → XP_017447475.3  dynein axonemal assembly factor 9 isoform X2

    UniProtKB/TrEMBL
    A0A8I6AF68

  3. XM_063284380.1 → XP_063140450.1  dynein axonemal assembly factor 9 isoform X4

    UniProtKB/TrEMBL
    A0A8I6AF68

  4. XM_063284379.1 → XP_063140449.1  dynein axonemal assembly factor 9 isoform X3

    UniProtKB/TrEMBL
    A0A8I6AF68

  5. XM_039105696.2 → XP_038961624.2  dynein axonemal assembly factor 9 isoform X5

    UniProtKB/TrEMBL
    A0A8I6AF68

  6. XM_039105698.2 → XP_038961626.2  dynein axonemal assembly factor 9 isoform X6

Nucleotide Protein Strain
Heading Accession and Version

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