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1700109H08Rikl RIKEN cDNA 1700109H08 gene like [ Rattus norvegicus (Norway rat) ]

Gene ID: 500007, updated on 4-Jan-2025

Summary

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Official Symbol
1700109H08Riklprovided by RGD
Official Full Name
RIKEN cDNA 1700109H08 gene likeprovided by RGD
Primary source
RGD:1588445
See related
EnsemblRapid:ENSRNOG00000009135 AllianceGenome:RGD:1588445
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of signal transduction. [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Testes (RPKM 52.1), Thymus (RPKM 37.2) and 9 other tissues See more
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Genomic context

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See 1700109H08Rikl in Genome Data Viewer
Location:
4q13
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (31523787..31544317, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (30569045..30589503, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (27708212..27728730, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene GATA zinc finger domain containing 1 Neighboring gene peroxisomal biogenesis factor 1 Neighboring gene RNA binding motif protein 48 Neighboring gene family with sequence similarity 133, member B Neighboring gene uncharacterized LOC134486561 Neighboring gene cyclin-dependent kinase 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
calaxin-like
Names
EF-hand calcium-binding domain-containing protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    31523787..31544317 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039108582.2 → XP_038964510.1  calaxin-like isoform X2

    UniProtKB/TrEMBL
    A6K288
    Conserved Domains (1) summary
    COG5126
    Location:23 → 128
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

  2. XM_006236077.5 → XP_006236139.1  calaxin-like isoform X1

    See identical proteins and their annotated locations for XP_006236139.1

    UniProtKB/TrEMBL
    F1LX06
    Related
    ENSRNOP00000060110.3, ENSRNOT00000068499.4
    Conserved Domains (2) summary
    pfam13499
    Location:105 → 174
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:104 → 175
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials