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Cped1 cadherin-like and PC-esterase domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 500046, updated on 9-Dec-2024

Summary

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Official Symbol
Cped1provided by RGD
Official Full Name
cadherin-like and PC-esterase domain containing 1provided by RGD
Primary source
RGD:1563491
See related
EnsemblRapid:ENSRNOG00000021840 AllianceGenome:RGD:1563491
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in endoplasmic reticulum. Orthologous to human CPED1 (cadherin like and PC-esterase domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Lung (RPKM 212.4), Adrenal (RPKM 181.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Cped1 in Genome Data Viewer
Location:
4q22
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (51482497..51755440)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (50516712..50789651)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (49055988..49333729)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 6C-2-like Neighboring gene inhibitor of growth family, member 3 Neighboring gene Wnt family member 16 Neighboring gene FAM3 metabolism regulating signaling molecule C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC112827

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
cadherin-like and PC-esterase domain containing 1; cadherin-like and PC-esterase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001431795.1 → NP_001418724.1  cadherin-like and PC-esterase domain containing 1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    A0A0G2QC10, A0A8I6AHU9

  2. NM_001431796.1 → NP_001418725.1  cadherin-like and PC-esterase domain containing 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    A0A0G2QC10

  3. NM_001431797.1 → NP_001418726.1  cadherin-like and PC-esterase domain containing 1 isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    A0A0G2QC10

  4. NM_001431798.1 → NP_001418727.1  cadherin-like and PC-esterase domain containing 1 isoform 4

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    51482497..51755440
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039108608.2 → XP_038964536.1  cadherin-like and PC-esterase domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    pfam12733
    Location:576 → 663
    Cadherin-like; Cadherin-like beta sandwich domain

  2. XM_002729287.6 → XP_002729333.2  cadherin-like and PC-esterase domain-containing protein 1 isoform X1

    Related
    ENSRNOP00000092551.1, ENSRNOT00000105639.2
    Conserved Domains (2) summary
    pfam12733
    Location:582 → 663
    Cadherin-like; Cadherin-like beta sandwich domain
    pfam13839
    Location:757 → 1017
    PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

  3. XM_039108607.2 → XP_038964535.1  cadherin-like and PC-esterase domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A0G2QC10
    Conserved Domains (1) summary
    pfam12733
    Location:419 → 506
    Cadherin-like; Cadherin-like beta sandwich domain

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001037213.1: Suppressed sequence

    Description
    NM_001037213.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
Nucleotide Protein Strain
Heading Accession and Version

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