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C4h2orf81 similar to human chromosome 2 open reading frame 81 [ Rattus norvegicus (Norway rat) ]

Gene ID: 500227, updated on 27-Nov-2024

Summary

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Official Symbol
C4h2orf81provided by RGD
Official Full Name
similar to human chromosome 2 open reading frame 81provided by RGD
Primary source
RGD:1566019
See related
AllianceGenome:RGD:1566019
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in cytoplasm. Predicted to be part of dynein complex. Orthologous to human C2orf81 (chromosome 2 open reading frame 81). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 83.7), Lung (RPKM 9.0) and 2 other tissues See more
Orthologs
human mouse all
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Genomic context

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See C4h2orf81 in Genome Data Viewer
Location:
4q34
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (117219357..117225633)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (115661617..115667929)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (114854449..114860678)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108350719 Neighboring gene INO80 complex subunit B Neighboring gene rhotekin Neighboring gene WD repeat domain 54 Neighboring gene dynactin subunit 1 Neighboring gene solute carrier family 4 member 5 Neighboring gene uncharacterized LOC134486596

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in cell cortex IEA
Inferred from Electronic Annotation
more info
  
part_of dynein complex IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein C2orf81 homolog
Names
hypothetical gene supported by BC079424

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024330.1 → NP_001019501.1  uncharacterized protein C2orf81 homolog

    See identical proteins and their annotated locations for NP_001019501.1

    Status: VALIDATED

    Source sequence(s)
    BC079424
    UniProtKB/Swiss-Prot
    Q6AXP4
    UniProtKB/TrEMBL
    A0A8I6AQ46
    Conserved Domains (1) summary
    pfam15479
    Location:6 → 570
    DUF4639; Domain of unknown function (DUF4639)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    117219357..117225633
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006236784.4 → XP_006236846.1  uncharacterized protein C2orf81 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8I6AQ46
    Conserved Domains (1) summary
    pfam15479
    Location:6 → 496
    DUF4639; Domain of unknown function (DUF4639)

  2. XM_039108155.2 → XP_038964083.1  uncharacterized protein C2orf81 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8I6AQ46
    Conserved Domains (1) summary
    pfam15479
    Location:8 → 571
    DUF4639; Domain of unknown function (DUF4639)

  3. XM_039108156.2 → XP_038964084.1  uncharacterized protein C2orf81 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8I6AQ46
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6AXP4.1 GenPept UniProtKB/Swiss-Prot:Q6AXP4

Gene LinkOut

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