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Fancd2os FANCD2 opposite strand [ Rattus norvegicus (Norway rat) ]

Gene ID: 500294, updated on 2-Nov-2024

Summary

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Official Symbol
Fancd2osprovided by RGD
Official Full Name
FANCD2 opposite strandprovided by RGD
Primary source
RGD:1565997
See related
EnsemblRapid:ENSRNOG00000010177 AllianceGenome:RGD:1565997
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565997
Summary
Orthologous to human FANCD2OS (FANCD2 opposite strand). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 130.8) and Kidney (RPKM 20.6) See more
Orthologs
human mouse all
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Genomic context

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See Fancd2os in Genome Data Viewer
Location:
4q42
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (148296478..148303037, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (146740863..146747547, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (145549248..145556054, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich with EGF-like domains 1 Neighboring gene proline-rich transmembrane protein 3 Neighboring gene ER membrane protein complex subunit 3 Neighboring gene FA complementation group D2 Neighboring gene BRICK1 subunit of SCAR/WAVE actin nucleating complex Neighboring gene von Hippel-Lindau tumor suppressor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
FANCD2 opposite strand protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109251.1 → NP_001102721.1  FANCD2 opposite strand protein

    See identical proteins and their annotated locations for NP_001102721.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473957
    UniProtKB/TrEMBL
    A0A8I6AGF3, A6IBT0, D3ZY74
    Related
    ENSRNOP00000013503.3, ENSRNOT00000013503.7
    Conserved Domains (1) summary
    pfam15124
    Location:3 → 178
    FANCD2OS; FANCD2 opposite strand protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    148296478..148303037 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006237052.5 → XP_006237114.1  FANCD2 opposite strand protein isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZL65, A0A8I6AGF3
    Conserved Domains (1) summary
    pfam15124
    Location:21 → 196
    DUF4563; Domain of unknown function (DUF4563)

  2. XM_006237051.4 → XP_006237113.1  FANCD2 opposite strand protein isoform X1

    UniProtKB/TrEMBL
    A0A8I6AGF3
    Related
    ENSRNOP00000078397.2, ENSRNOT00000108692.2
    Conserved Domains (1) summary
    pfam15124
    Location:69 → 244
    DUF4563; Domain of unknown function (DUF4563)
Nucleotide Protein Strain
Heading Accession and Version

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