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Cd99l4 CD99 molecule like 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 500410, updated on 9-Dec-2024

Summary

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Official Symbol
Cd99l4provided by RGD
Official Full Name
CD99 molecule like 4provided by RGD
Primary source
RGD:1559441
See related
EnsemblRapid:ENSRNOG00000088438 AllianceGenome:RGD:1559441
Gene type
protein coding
RefSeq status
INFERRED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1559441
Summary
Predicted to be located in membrane. Orthologous to human CD99L2 (CD99 molecule like 2). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Brain (RPKM 25.8), Testes (RPKM 21.4) and 8 other tissues See more
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Genomic context

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See Cd99l4 in Genome Data Viewer
Location:
5q13
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (29520061..29585317)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (24722672..24769964)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (24860132..24917047)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene RNA binding protein with serine rich domain 1, pseudogene 5 Neighboring gene DLG associated protein 5 like 1 Neighboring gene ST13, Hsp70 interacting protein, pseudogene 6 Neighboring gene discs large MAGUK scaffold protein 5 like 7 Neighboring gene uncharacterized LOC120102830

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in T cell extravasation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in homotypic cell-cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of neutrophil extravasation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
CD99 molecule like 4
Names
CD99 antigen-like protein 2
disks large homolog 5-like
rCG65881-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419510.1 → NP_001406439.1  CD99 molecule like 4 precursor

    Status: INFERRED

    Source sequence(s)
    JAXUCZ010000005
    Related
    ENSRNOP00000109363.1, ENSRNOT00000128421.1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    29520061..29585317
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063288201.1 → XP_063144271.1  CD99 molecule like 4 isoform X2

    Related
    ENSRNOP00000111020.1, ENSRNOT00000155474.1

  2. XM_063288203.1 → XP_063144273.1  CD99 molecule like 4 isoform X3

  3. XM_039110935.2 → XP_038966863.1  CD99 molecule like 4 isoform X4

    Conserved Domains (1) summary
    pfam12301
    Location:4 → 127
    CD99L2; CD99 antigen like protein 2

  4. XM_063288204.1 → XP_063144274.1  CD99 molecule like 4 isoform X4

  5. XM_063288197.1 → XP_063144267.1  CD99 molecule like 4 isoform X1

  6. XM_063288199.1 → XP_063144269.1  CD99 molecule like 4 isoform X1

  7. XM_063288198.1 → XP_063144268.1  CD99 molecule like 4 isoform X1

  8. XM_063288200.1 → XP_063144270.1  CD99 molecule like 4 isoform X1

RNA

  1. XR_010066450.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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