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CG13643 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 50074, updated on 9-Dec-2024

Summary

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Official Symbol
CG13643provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0040601
Locus tag
Dmel_CG13643
See related
AllianceGenome:FB:FBgn0040601
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG13642; Dmel\CG13643
Summary
Predicted to enable chitin binding activity. Predicted to be located in extracellular region. Is expressed in embryonic antennal sense organ; embryonic head sensory system; and larval labral sensory complex. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG13643 in Genome Data Viewer
Location:
96B4-96B5; 3-86 cM
Exon count:
6
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (24897685..24906004, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (20723407..20731726, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene transfer RNA:Aspartic acid-GTC 1-12 Neighboring gene antisense RNA:CR44267 Neighboring gene Phosphatidylinositol glycan anchor biosynthesis class S

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome. MacMillan HA, et al. Sci Rep, 2016 Jun 30. PMID 27357258, Free PMC Article
  2. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article
  3. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article
  4. A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. Neely GG, et al. Cell, 2010 Nov 12. PMID 21074052, Free PMC Article
  5. Systematic genetic analysis of muscle morphogenesis and function in Drosophila. Schnorrer F, et al. Nature, 2010 Mar 11. PMID 20220848

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG13643-PB
CG13643-PC
CG13643-PD
CG13643-PE

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    24897685..24906004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001276009.1 → NP_001262938.1  uncharacterized protein Dmel_CG13643, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262938.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KI11
    Conserved Domains (1) summary
    pfam01607
    Location:63 → 114
    CBM_14; Chitin binding Peritrophin-A domain

  2. NM_001276007.1 → NP_001262936.1  uncharacterized protein Dmel_CG13643, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262936.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VC14
    Conserved Domains (1) summary
    pfam01607
    Location:63 → 114
    CBM_14; Chitin binding Peritrophin-A domain

  3. NM_001276008.1 → NP_001262937.1  uncharacterized protein Dmel_CG13643, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262937.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KHG9
    Conserved Domains (1) summary
    pfam01607
    Location:63 → 126
    CBM_14; Chitin binding Peritrophin-A domain

  4. NM_143996.3 → NP_652253.1  uncharacterized protein Dmel_CG13643, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_652253.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VC14
    Related
    FBpp0297710
    Conserved Domains (1) summary
    pfam01607
    Location:63 → 114
    CBM_14; Chitin binding Peritrophin-A domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0B4KHG9 A0A0B4KHG9
A0A0B4KI11 A0A0B4KI11
Q9VC14 Q9VC14

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