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MIR395c [ Arabidopsis thaliana (thale cress) ]

Gene ID: 5007729, updated on 11-Sep-2024

Summary

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Official Symbol
MIR395c
Primary source
TAIR:AT1G26985
Locus tag
AT1G26985
See related
Araport:AT1G26985
Gene type
ncRNA
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MICRORNA 395; microRNA395C; MIR395; MIR395C; p_MI0001009
Summary
Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGGACUC. Predicted targets are ATP sulfurylases.
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Genomic context

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See MIR395c in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (9367080..9367179)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene GRIP/coiled-coil protein, putative (DUF1664) Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Jones-Rhoades MW, et al. Mol Cell, 2004 Jun 18. PMID 15200956
  2. microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Allen E, et al. Cell, 2005 Apr 22. PMID 15851028
  3. Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing. Hsieh LC, et al. Plant Physiol, 2009 Dec. PMID 19854858, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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  • mature miRNA accession:MIMAT0000940

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to phosphate starvation IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within cellular response to sulfate starvation IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within cellular response to sulfur starvation IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within miRNA-mediated post-transcriptional gene silencing IDA
Inferred from Direct Assay
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9367080..9367179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_139793.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials