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Armcx1 armadillo repeat containing, X-linked 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 501619, updated on 27-Nov-2024

Summary

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Official Symbol
Armcx1provided by RGD
Official Full Name
armadillo repeat containing, X-linked 1provided by RGD
Primary source
RGD:1561629
See related
EnsemblRapid:ENSRNOG00000046862 AllianceGenome:RGD:1561629
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to act upstream of or within hematopoietic stem cell homeostasis. Predicted to be located in mitochondrial outer membrane. Predicted to be active in mitochondrion. Orthologous to human ARMCX1 (armadillo repeat containing X-linked 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 117.9), Lung (RPKM 93.3) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Armcx1 in Genome Data Viewer
Location:
Xq32
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (102192225..102196130)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (97898969..97902874)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (105535670..105539575)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene armadillo repeat containing, X-linked 4 Neighboring gene ribosomal protein S29, pseudogene 8 Neighboring gene protein ARMCX6-like Neighboring gene armadillo repeat containing, X-linked 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
acts_upstream_of_or_within hematopoietic stem cell homeostasis ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
armadillo repeat-containing X-linked protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024367.1 → NP_001019538.1  armadillo repeat-containing X-linked protein 1

    See identical proteins and their annotated locations for NP_001019538.1

    Status: PROVISIONAL

    Source sequence(s)
    BC085780
    UniProtKB/Swiss-Prot
    Q5U310
    UniProtKB/TrEMBL
    A6IVG9
    Related
    ENSRNOP00000043675.3, ENSRNOT00000052422.7
    Conserved Domains (1) summary
    pfam04826
    Location:204 → 445
    Arm_2; Armadillo-like

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    102192225..102196130
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006257243.5 → XP_006257305.1  armadillo repeat-containing X-linked protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006257305.1

    UniProtKB/Swiss-Prot
    Q5U310
    UniProtKB/TrEMBL
    A6IVG9
    Related
    ENSRNOP00000108980.1, ENSRNOT00000139244.1
    Conserved Domains (1) summary
    pfam04826
    Location:204 → 445
    Arm_2; Armadillo-like

  2. XM_039099980.2 → XP_038955908.1  armadillo repeat-containing X-linked protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5U310
    UniProtKB/TrEMBL
    A6IVG9
    Conserved Domains (1) summary
    pfam04826
    Location:204 → 445
    Arm_2; Armadillo-like
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5U310.1 GenPept UniProtKB/Swiss-Prot:Q5U310

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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