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Slc35f1 solute carrier family 35, member F1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 502421, updated on 4-Jan-2025

Summary

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Official Symbol
Slc35f1provided by RGD
Official Full Name
solute carrier family 35, member F1provided by RGD
Primary source
RGD:1559576
See related
EnsemblRapid:ENSRNOG00000000412 AllianceGenome:RGD:1559576
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1559576
Summary
Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in synaptic vesicle membrane. Orthologous to human SLC35F1 (solute carrier family 35 member F1). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Brain (RPKM 125.6), Heart (RPKM 18.0) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See Slc35f1 in Genome Data Viewer
Location:
20q11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (32573091..32961466)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (32030350..32418762)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (33772314..34420970)

Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene NUS1 dehydrodolichyl diphosphate synthase subunit Neighboring gene actin-related protein 2/3 complex subunit 2-like Neighboring gene uncharacterized LOC120098877 Neighboring gene uncharacterized LOC134483927 Neighboring gene uncharacterized LOC120098878 Neighboring gene peroxiredoxin 1, pseudogene 7 Neighboring gene uncharacterized LOC134483813 Neighboring gene centrosomal protein 85-like Neighboring gene phospholamban

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in synaptic vesicle membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
solute carrier family 35 member F1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109338.1 → NP_001102808.1  solute carrier family 35 member F1

    See identical proteins and their annotated locations for NP_001102808.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474016
    UniProtKB/TrEMBL
    A6K487, D3ZFM3
    Related
    ENSRNOP00000000468.8, ENSRNOT00000000468.7
    Conserved Domains (1) summary
    pfam06027
    Location:56 → 355
    SLC35F; Solute carrier family 35

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086038.1 Reference GRCr8

    Range
    32573091..32961466
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039099032.2 → XP_038954960.1  solute carrier family 35 member F1 isoform X1

    Conserved Domains (1) summary
    pfam06027
    Location:1 → 296
    SLC35F; Solute carrier family 35
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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