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LINJ_35_4220 hsp70 subfamily B suppressor 1 [ Leishmania infantum JPCM5 ]

Gene ID: 5073319, updated on 30-Oct-2024

Summary

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Gene symbol
LINJ_35_4220
Gene description
hsp70 subfamily B suppressor 1
Locus tag
LINJ_35_4220
Gene type
protein coding
RNA name
hsp70 subfamily B suppressor 1
RefSeq status
PROVISIONAL
Organism
Leishmania infantum JPCM5 (strain: JPCM5)
Lineage
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania
Orthologs
Leishmania major all
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Genomic context

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See LINJ_35_4220 in Genome Data Viewer
Location:
chromosome: 35
Exon count:
1
Sequence:
Chromosome: 35; NC_009419.2 (1642295..1644235)

Chromosome 35 - NC_009419.2Genomic Context describing neighboring genes Neighboring gene poly(A)-binding protein 2 Neighboring gene hypothetical protein, unknown function Neighboring gene conserved hypothetical protein Neighboring gene conserved hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009419.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomic analysis of three Leishmania species that cause diverse human disease. Peacock CS, et al. Nat Genet, 2007 Jul. PMID 17572675, Free PMC Article
  2. Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Rogers MB, et al. Genome Res, 2011 Dec. PMID 22038252, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translational elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hsp70 subfamily B suppressor 1
putative elongation factor 1-alpha

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009419.2 Reference assembly

    Range
    1642295..1644235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001469187.1 → XP_001469224.1  hsp70 subfamily B suppressor 1 [Leishmania infantum JPCM5]

    See identical proteins and their annotated locations for XP_001469224.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2K4Z6W6, A0A381MWV8, A0A6L0Y220, A4IBV5
    Conserved Domains (1) summary
    COG5256
    Location:221 → 644
    TEF1; Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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