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Cdca8 cell division cycle associated 8 [ Mus musculus (house mouse) ]

Gene ID: 52276, updated on 27-Nov-2024

Summary

Official Symbol
Cdca8provided by MGI
Official Full Name
cell division cycle associated 8provided by MGI
Primary source
MGI:MGI:1196274
See related
Ensembl:ENSMUSG00000028873 AllianceGenome:MGI:1196274
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
BOR; DasraB; MESRGP; Borealin; D4Ertd421e; 4831429J16Rik
Summary
Predicted to be involved in mitotic metaphase chromosome alignment. Located in chromocenter. Is expressed in several structures, including central nervous system; early embryo; gonad; metanephros; and retina. Orthologous to human CDCA8 (cell division cycle associated 8). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in liver E14 (RPKM 40.8), liver E14.5 (RPKM 38.3) and 17 other tissues See more
Orthologs
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Genomic context

See Cdca8 in Genome Data Viewer
Location:
4 D2.2; 4 57.93 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (124812258..124830710, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (124918465..124936917, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene yrdC domain containing (E.coli) Neighboring gene mannosidase, endo-alpha-like Neighboring gene RIKEN cDNA 1700125G02 gene Neighboring gene Eph receptor A10 Neighboring gene STARR-positive B cell enhancer ABC_E424 Neighboring gene STARR-positive B cell enhancer ABC_E4665 Neighboring gene AFG2 interacting ribosome maturation factor Neighboring gene predicted gene 12930 Neighboring gene predicted gene, 32371

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in chromocenter IDA
Inferred from Direct Assay
more info
PubMed 
part_of chromosome passenger complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of chromosome passenger complex ISO
Inferred from Sequence Orthology
more info
 
part_of chromosome passenger complex ISS
Inferred from Sequence or Structural Similarity
more info
 
is_active_in chromosome, centromeric region IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in chromosome, centromeric region IEA
Inferred from Electronic Annotation
more info
 
located_in chromosome, centromeric region ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in intercellular bridge IEA
Inferred from Electronic Annotation
more info
 
located_in intercellular bridge ISO
Inferred from Sequence Orthology
more info
 
located_in microtubule cytoskeleton ISO
Inferred from Sequence Orthology
more info
 
located_in midbody IEA
Inferred from Electronic Annotation
more info
 
located_in midbody ISO
Inferred from Sequence Orthology
more info
 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
part_of protein-containing complex ISO
Inferred from Sequence Orthology
more info
 
part_of protein-containing complex ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in spindle IEA
Inferred from Electronic Annotation
more info
 
is_active_in spindle midzone IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
borealin
Names
MESrg
cell division cycle-associated protein 8
embryonic stem cell-related

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026560.4NP_080836.3  borealin

    See identical proteins and their annotated locations for NP_080836.3

    Status: VALIDATED

    Source sequence(s)
    AK077717, BY137168
    Consensus CDS
    CCDS18631.1
    UniProtKB/Swiss-Prot
    B1ARX0, B1ARX1, Q6NVD3, Q8BHB1, Q8BHQ5, Q8BHQ9, Q8BHX3, Q9CRN4, Q9CS02, Q9CTF4
    Related
    ENSMUSP00000081319.4, ENSMUST00000084296.10
    Conserved Domains (2) summary
    pfam10444
    Location:2276
    Nbl1_Borealin_N; Nbl1 / Borealin N terminal
    pfam10512
    Location:170284
    Borealin; Cell division cycle-associated protein 8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    124812258..124830710 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)