U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SYNRG synergin gamma [ Bos taurus (domestic cattle) ]

Gene ID: 533098, updated on 27-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
SYNRGprovided by VGNC
Official Full Name
synergin gammaprovided by VGNC
Primary source
VGNC:VGNC:35533
See related
BGD:BT15043; Ensembl:ENSBTAG00000010292
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
AP1GBP1
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SYNRG in Genome Data Viewer
Location:
chromosome: 19
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (13810489..13895920, complement)

Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene transcriptional adaptor 2A Neighboring gene uncharacterized LOC132343012 Neighboring gene dual specificity phosphatase 14 Neighboring gene DExD-box helicase 52 Neighboring gene HNF1 homeobox B

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC157114

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of clathrin coat of trans-Golgi network vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
synergin gamma
Names
AP1 gamma subunit binding protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102152.2 → NP_001095622.1  synergin gamma

    Status: PROVISIONAL

    Source sequence(s)
    BC149473
    UniProtKB/TrEMBL
    A0A3Q1N3D4, A6QPT5
    Related
    ENSBTAP00000063966.2, ENSBTAT00000067614.2
    Conserved Domains (3) summary
    cd00052
    Location:385 → 435
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    cl00928
    Location:115 → 149
    dsDNA_bind; Double-stranded DNA-binding domain
    cl09607
    Location:378 → 523
    Gly_reductase; Glycine/sarcosine/betaine reductase component B subunits

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    13810489..13895920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005220017.5 → XP_005220074.1  synergin gamma isoform X6

    UniProtKB/TrEMBL
    A0AAA9U0I4
    Conserved Domains (3) summary
    cd00052
    Location:237 → 288
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    cl00928
    Location:115 → 149
    dsDNA_bind; Double-stranded DNA-binding domain
    cl09607
    Location:230 → 375
    Gly_reductase; Glycine/sarcosine/betaine reductase component B subunits

  2. XM_005220018.5 → XP_005220075.1  synergin gamma isoform X7

    UniProtKB/TrEMBL
    A0A3Q1MYN7, A0AAA9U0I4
    Related
    ENSBTAP00000061200.2, ENSBTAT00000077558.2
    Conserved Domains (3) summary
    cd00052
    Location:238 → 289
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    cl00928
    Location:116 → 150
    dsDNA_bind; Double-stranded DNA-binding domain
    cl09607
    Location:231 → 376
    Gly_reductase; Glycine/sarcosine/betaine reductase component B subunits

  3. XM_005220016.5 → XP_005220073.1  synergin gamma isoform X5

    UniProtKB/TrEMBL
    A0AAA9U0I4
    Conserved Domains (3) summary
    cd00052
    Location:238 → 289
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    cl00928
    Location:116 → 150
    dsDNA_bind; Double-stranded DNA-binding domain
    cl09607
    Location:231 → 376
    Gly_reductase; Glycine/sarcosine/betaine reductase component B subunits

  4. XM_005220014.5 → XP_005220071.1  synergin gamma isoform X3

    UniProtKB/TrEMBL
    A0A3Q1MIN9
    Related
    ENSBTAP00000070601.2, ENSBTAT00000076983.2
    Conserved Domains (3) summary
    cd00052
    Location:316 → 367
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    cl00928
    Location:116 → 150
    dsDNA_bind; Double-stranded DNA-binding domain
    cl09607
    Location:309 → 454
    Gly_reductase; Glycine/sarcosine/betaine reductase component B subunits

  5. XM_005220015.5 → XP_005220072.1  synergin gamma isoform X4

    UniProtKB/TrEMBL
    A0AAA9U0I4
    Related
    ENSBTAP00000102582.1, ENSBTAT00000123000.1
    Conserved Domains (3) summary
    cd00052
    Location:308 → 359
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    cl00928
    Location:116 → 150
    dsDNA_bind; Double-stranded DNA-binding domain
    cl09607
    Location:301 → 446
    Gly_reductase; Glycine/sarcosine/betaine reductase component B subunits

  6. XM_015458543.3 → XP_015314029.1  synergin gamma isoform X9

    Conserved Domains (3) summary
    cd00052
    Location:386 → 437
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    cl00928
    Location:116 → 150
    dsDNA_bind; Double-stranded DNA-binding domain
    cl09607
    Location:379 → 524
    Gly_reductase; Glycine/sarcosine/betaine reductase component B subunits

  7. XM_005220011.5 → XP_005220068.1  synergin gamma isoform X2

    UniProtKB/TrEMBL
    A0A3Q1N3D4, A0AAA9TQK4
    Related
    ENSBTAP00000100866.1, ENSBTAT00000128498.1
    Conserved Domains (3) summary
    cd00052
    Location:386 → 437
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    cl00928
    Location:116 → 150
    dsDNA_bind; Double-stranded DNA-binding domain
    cl09607
    Location:379 → 524
    Gly_reductase; Glycine/sarcosine/betaine reductase component B subunits

  8. XM_005220010.5 → XP_005220067.1  synergin gamma isoform X1

    UniProtKB/TrEMBL
    A0A3Q1N3D4, F1MI41
    Related
    ENSBTAP00000013601.5, ENSBTAT00000013601.6
    Conserved Domains (3) summary
    cd00052
    Location:386 → 437
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    cl00928
    Location:116 → 150
    dsDNA_bind; Double-stranded DNA-binding domain
    cl09607
    Location:379 → 524
    Gly_reductase; Glycine/sarcosine/betaine reductase component B subunits

  9. XM_010815774.4 → XP_010814076.1  synergin gamma isoform X8

    UniProtKB/TrEMBL
    A0A3Q1N3D4
    Conserved Domains (2) summary
    cd00052
    Location:202 → 253
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    cl09607
    Location:195 → 340
    Gly_reductase; Glycine/sarcosine/betaine reductase component B subunits
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.