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RNF216 ring finger protein 216 [ Bos taurus (domestic cattle) ]

Gene ID: 534455, updated on 1-Jan-2025

Summary

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Official Symbol
RNF216provided by VGNC
Official Full Name
ring finger protein 216provided by VGNC
Primary source
VGNC:VGNC:34053
See related
BGD:BT14707; Ensembl:ENSBTAG00000017175
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
TRIAD3
Orthologs
human mouse all
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Genomic context

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See RNF216 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (38616501..38737195)

Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 182 Neighboring gene olfactory receptor family 10 subfamily AH member 1 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene fascin actin-bundling protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein linear polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of LUBAC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF216
NP_001180187.1
XP_005225226.1
XP_059737366.1
XP_059737367.1
XP_059737368.1
XP_059737369.1
XP_059737370.1
XP_059737371.1
XP_059737372.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001193258.1 → NP_001180187.1  E3 ubiquitin-protein ligase RNF216

    See identical proteins and their annotated locations for NP_001180187.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000025
    UniProtKB/TrEMBL
    A0AAA9T7A0
    Related
    ENSBTAP00000092620.1, ENSBTAT00000124343.1
    Conserved Domains (1) summary
    cd16630
    Location:516 → 572
    RING-HC_RBR_RNF216; RING finger, HC subclass, found in RING finger protein 216 (RNF216) and similar proteins

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    38616501..38737195
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059881385.1 → XP_059737368.1  E3 ubiquitin-protein ligase RNF216 isoform X1

    UniProtKB/TrEMBL
    A0AAA9T7A0, E1BHM7

  2. XM_059881386.1 → XP_059737369.1  E3 ubiquitin-protein ligase RNF216 isoform X1

    UniProtKB/TrEMBL
    A0AAA9T7A0, E1BHM7

  3. XM_059881384.1 → XP_059737367.1  E3 ubiquitin-protein ligase RNF216 isoform X1

    UniProtKB/TrEMBL
    A0AAA9T7A0, E1BHM7

  4. XM_059881387.1 → XP_059737370.1  E3 ubiquitin-protein ligase RNF216 isoform X2

    UniProtKB/TrEMBL
    A0AAA9T7A0

  5. XM_059881383.1 → XP_059737366.1  E3 ubiquitin-protein ligase RNF216 isoform X1

    UniProtKB/TrEMBL
    A0AAA9T7A0, E1BHM7

  6. XM_005225169.5 → XP_005225226.1  E3 ubiquitin-protein ligase RNF216 isoform X1

    See identical proteins and their annotated locations for XP_005225226.1

    UniProtKB/TrEMBL
    A0AAA9T7A0, E1BHM7
    Related
    ENSBTAP00000022820.6, ENSBTAT00000022820.7
    Conserved Domains (1) summary
    cd16630
    Location:573 → 629
    RING-HC_RBR_RNF216; RING finger, HC subclass, found in RING finger protein 216 (RNF216) and similar proteins

  7. XM_059881389.1 → XP_059737372.1  E3 ubiquitin-protein ligase RNF216 isoform X4

    UniProtKB/TrEMBL
    A0AAA9TNX3
    Related
    ENSBTAP00000098031.1, ENSBTAT00000120364.1

  8. XM_059881388.1 → XP_059737371.1  E3 ubiquitin-protein ligase RNF216 isoform X3

    UniProtKB/TrEMBL
    A0AAA9TNX3
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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