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Phgr1 proline/histidine/glycine-rich 1 [ Mus musculus (house mouse) ]

Gene ID: 53906, updated on 4-Jan-2025

Summary

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Official Symbol
Phgr1provided by MGI
Official Full Name
proline/histidine/glycine-rich 1provided by MGI
Primary source
MGI:MGI:1858382
See related
Ensembl:ENSMUSG00000046804 AllianceGenome:MGI:1858382
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1810007E14Rik
Summary
Orthologous to human PHGR1 (proline, histidine and glycine rich 1). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in colon adult (RPKM 3882.1), duodenum adult (RPKM 1151.7) and 3 other tissues See more
Orthologs
human all
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Genomic context

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See Phgr1 in Genome Data Viewer
Location:
2 E5; 2 59.46 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (118603255..118608646)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (118772774..118778165)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene InaF motif containing 2 Neighboring gene coiled-coil domain containing 9B Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:118588340-118588523 Neighboring gene STARR-positive B cell enhancer mm9_chr2:118590344-118590645 Neighboring gene predicted gene, 54146 Neighboring gene dispatched RND transporter family member 2 Neighboring gene predicted gene, 38629

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Putative assignment of ESTs to the genetic map by use of the SSLP database. Herron BJ, et al. Mamm Genome, 1998 Dec. PMID 9880682
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
proline, histidine and glycine-rich protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145644.2 → NP_001139116.1  proline, histidine and glycine-rich protein 1

    Status: VALIDATED

    Source sequence(s)
    AK019007, BY707466
    Consensus CDS
    CCDS57182.1
    UniProtKB/Swiss-Prot
    Q8K0G7
    Related
    ENSMUSP00000135093.2, ENSMUST00000130293.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    118603255..118608646
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_025308.1: Suppressed sequence

    Description
    NM_025308.1: This RefSeq was permanently suppressed because currently there is support for the transcript, but not for the protein.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8K0G7.1 GenPept UniProtKB/Swiss-Prot:Q8K0G7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
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