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LBRM_09_1000 SLA/LP autoantigen-like protein [ Leishmania braziliensis MHOM/BR/75/M2904 ]

Gene ID: 5413192, updated on 30-Oct-2024

Summary

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Gene symbol
LBRM_09_1000
Gene description
SLA/LP autoantigen-like protein
Locus tag
LBRM_09_1000
Gene type
protein coding
RNA name
SLA/LP autoantigen-like protein
RefSeq status
PROVISIONAL
Organism
Leishmania braziliensis MHOM/BR/75/M2904 (strain: MHOM/BR/75/M2904)
Lineage
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania braziliensis species complex
Orthologs
Leishmania major all
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Genomic context

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See LBRM_09_1000 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
1
Sequence:
Chromosome: 9; NC_009301.2 (363228..365180, complement)

Chromosome 9 - NC_009301.2Genomic Context describing neighboring genes Neighboring gene putative calmodulin Neighboring gene conserved hypothetical protein Neighboring gene conserved hypothetical protein Neighboring gene elongation factor-1 gamma

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009301.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomic analysis of three Leishmania species that cause diverse human disease. Peacock CS, et al. Nat Genet, 2007 Jul. PMID 17572675, Free PMC Article
  2. Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Rogers MB, et al. Genome Res, 2011 Dec. PMID 22038252, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-phosphoseryl-tRNA(Sec) selenium transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in conversion of seryl-tRNAsec to selenocys-tRNAsec IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in selenocysteine incorporation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
SLA/LP autoantigen-like protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009301.2 Reference assembly

    Range
    363228..365180 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001562664.1 → XP_001562714.1  SLA/LP autoantigen-like protein [Leishmania braziliensis MHOM/BR/75/M2904]

    See identical proteins and their annotated locations for XP_001562714.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A3P3YZL5, A4H5S3
    Conserved Domains (1) summary
    cl18945
    Location:68 → 645
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
Heading Accession and Version

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