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zds zeta-carotene desaturase [ Solanum lycopersicum (tomato) ]

Gene ID: 543629, updated on 5-Nov-2024

Summary

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Gene symbol
zds
Gene description
zeta-carotene desaturase
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See zds in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 1 NC_090800.1 (84373361..84381443, complement)
103 previous assembly SL3.0 (GCF_000188115.4) 1 NC_015438.3 (88390911..88398960, complement)

Chromosome 1 - NC_090800.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101268432 Neighboring gene DNA damage-repair/toleration protein DRT102 Neighboring gene uncharacterized LOC101244322 Neighboring gene uncharacterized LOC104644367 Neighboring gene probable serine/threonine-protein kinase WNK9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manipulation of ZDS in tomato exposes carotenoid- and ABA-specific effects on fruit development and ripening. McQuinn RP, et al. Plant Biotechnol J, 2020 Nov. PMID 32171044, Free PMC Article
  2. The electronic plant gene register. . Plant Physiol, 1999 Dec. PMID 10594126, Free PMC Article
  3. Silencing of the phytoene desaturase (PDS) gene affects the expression of fruit-ripening genes in tomatoes. Naing AH, et al. Plant Methods, 2019. PMID 31592162, Free PMC Article
  4. Expressed sequence tags from the laboratory-grown miniature tomato (Lycopersicon esculentum) cultivar Micro-Tom and mining for single nucleotide polymorphisms and insertions/deletions in tomato cultivars. Yamamoto N, et al. Gene, 2005 Aug 15. PMID 15975739
  5. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 9,9'-di-cis-zeta-carotene desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotene biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carotenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-carotene desaturase, chloroplastic/chromoplastic
Names
9,9'-di-cis-zeta-carotene desaturase
carotene 7,8-desaturase
plastid zeta-carotene desaturase
NP_001234383.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247454.2 → NP_001234383.2  zeta-carotene desaturase, chloroplastic/chromoplastic

    Status: VALIDATED

    Source sequence(s)
    AF195507, BP902724, DB702927, GT166394
    UniProtKB/Swiss-Prot
    Q9SE20
    UniProtKB/TrEMBL
    Q202I0
    Conserved Domains (1) summary
    PLN02487
    Location:6 → 571
    PLN02487; zeta-carotene desaturase

RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090800.1 Reference SLM_r2.1 Primary Assembly

    Range
    84373361..84381443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_011211190.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SE20.1 GenPept UniProtKB/Swiss-Prot:Q9SE20

Gene LinkOut

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Molecular Biology Databases