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DXS 1-D-deoxyxylulose 5-phosphate synthase [ Solanum lycopersicum (tomato) ]

Gene ID: 544220, updated on 1-Nov-2024

Summary

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Gene symbol
DXS
Gene description
1-D-deoxyxylulose 5-phosphate synthase
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See DXS in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 1 NC_090800.1 (73138279..73142539, complement)
103 previous assembly SL3.0 (GCF_000188115.4) 1 NC_015438.3 (76679187..76683446, complement)

Chromosome 1 - NC_090800.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101247458 Neighboring gene uncharacterized LOC104647335 Neighboring gene uncharacterized LOC112941373 Neighboring gene rapid alkalinization factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interference with Clp protease impairs carotenoid accumulation during tomato fruit ripening. D'Andrea L, et al. J Exp Bot, 2018 Mar 24. PMID 29385595, Free PMC Article
  2. Metabolic engineering of the mevalonate and non-mevalonate isopentenyl diphosphate-forming pathways for the production of health-promoting isoprenoids in tomato. Enfissi EM, et al. Plant Biotechnol J, 2005 Jan. PMID 17168896
  3. The isogene 1-deoxy-D-xylulose 5-phosphate synthase 2 controls isoprenoid profiles, precursor pathway allocation, and density of tomato trichomes. Paetzold H, et al. Mol Plant, 2010 Sep. PMID 20591838
  4. Carotenoid biosynthesis during tomato fruit development: regulatory role of 1-deoxy-D-xylulose 5-phosphate synthase. Lois LM, et al. Plant J, 2000 Jun. PMID 10886770
  5. Bioinformatics study of 1-deoxy-D-xylulose-5-phosphate synthase (DXS) genes in Solanaceae. Pan X, et al. Mol Biol Rep, 2019 Oct. PMID 31313133

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-deoxy-D-xylulose-5-phosphate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chlorophyll biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in terpenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-D-deoxyxylulose 5-phosphate synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247743.2 → NP_001234672.1  1-D-deoxyxylulose 5-phosphate synthase

    See identical proteins and their annotated locations for NP_001234672.1

    Status: VALIDATED

    Source sequence(s)
    AF143812, AI774487, DB680862
    UniProtKB/TrEMBL
    C7U110, Q9XH50
    Conserved Domains (4) summary
    cd07033
    Location:415 → 557
    TPP_PYR_DXS_TK_like; Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins
    PLN02582
    Location:50 → 719
    PLN02582; 1-deoxy-D-xylulose-5-phosphate synthase
    pfam02780
    Location:577 → 700
    Transketolase_C; Transketolase, C-terminal domain
    pfam13292
    Location:76 → 361
    DXP_synthase_N; 1-deoxy-D-xylulose-5-phosphate synthase

RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090800.1 Reference SLM_r2.1 Primary Assembly

    Range
    73138279..73142539 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases