U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Smarca5-ps SNF2 related chromatin remodeling ATPase 5, pseudogene [ Mus musculus (house mouse) ]

Gene ID: 545700, updated on 19-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
Smarca5-psprovided by MGI
Official Full Name
SNF2 related chromatin remodeling ATPase 5, pseudogeneprovided by MGI
Primary source
MGI:MGI:2443330
See related
Ensembl:ENSMUSG00000052912 AllianceGenome:MGI:2443330
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9230115A19Rik
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Smarca5-ps in Genome Data Viewer
Location:
4 E1; 4 78.2 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (145190780..145194531)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (145464210..145467961)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_12024 Neighboring gene predicted gene, 42346 Neighboring gene STARR-seq mESC enhancer starr_12025 Neighboring gene STARR-positive B cell enhancer ABC_E9609 Neighboring gene STARR-positive B cell enhancer ABC_E2132 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145039173-145039474 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145043961-145044261 Neighboring gene STARR-seq mESC enhancer starr_12026 Neighboring gene carnitine deficiency-associated gene expressed in ventricle 3 pseudogene Neighboring gene 60S acidic ribosomal protein P1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_12028 Neighboring gene STARR-seq mESC enhancer starr_12029 Neighboring gene STARR-seq mESC enhancer starr_12030 Neighboring gene zinc finger protein 990

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Young JM, et al. Trends Genet, 2007 May. PMID 17382427
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Other Names

  • SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene
  • SWI/SNF related, matrix associated, actin depenent ragulator of chromatin, subfamily a, member 5, pseudogene

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002888.2 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AL606963
    Related
    ENSMUST00000121843.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    145190780..145194531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.