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Speer1m spermatogenesis associated glutamate (E)-rich protein 1M [ Mus musculus (house mouse) ]

Gene ID: 545732, updated on 27-Nov-2024

Summary

Official Symbol
Speer1mprovided by MGI
Official Full Name
spermatogenesis associated glutamate (E)-rich protein 1Mprovided by MGI
Primary source
MGI:MGI:3703021
See related
Ensembl:ENSMUSG00000067848 AllianceGenome:MGI:3703021
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4933402N22Rik
Expression
Restricted expression toward testis adult (RPKM 57.7) See more
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Genomic context

See Speer1m in Genome Data Viewer
Location:
5 A1; 5 3.91 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (11968010..11972771)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (11918043..11922804)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34493 Neighboring gene predicted gene 43131 Neighboring gene STARR-seq mESC enhancer starr_12435 Neighboring gene anaphase-promoting complex subunit 5 pseudogene Neighboring gene STARR-seq mESC enhancer starr_12436 Neighboring gene STARR-seq mESC enhancer starr_12437 Neighboring gene STARR-seq mESC enhancer starr_12438 Neighboring gene STARR-seq mESC enhancer starr_12439 Neighboring gene predicted gene, 54301

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Clone Names

  • MGC129480

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
spermatogenesis associated glutamate (E)-rich protein-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001177510.1NP_001170981.1  spermatogenesis associated glutamate (E)-rich protein-like protein

    See identical proteins and their annotated locations for NP_001170981.1

    Status: VALIDATED

    Source sequence(s)
    AC141559
    Consensus CDS
    CCDS51414.1
    UniProtKB/TrEMBL
    A3KN63, F6R3J9
    Related
    ENSMUSP00000130317.2, ENSMUST00000170301.3
    Conserved Domains (1) summary
    pfam04822
    Location:891
    Takusan; Takusan

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    11968010..11972771
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)