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Cldn34c5 claudin 34C5 [ Mus musculus (house mouse) ]

Gene ID: 546368, updated on 2-Nov-2024

Summary

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Official Symbol
Cldn34c5provided by MGI
Official Full Name
claudin 34C5provided by MGI
Primary source
MGI:MGI:3646000
See related
Ensembl:ENSMUSG00000118483 AllianceGenome:MGI:3646000
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm5945; EG546368
Summary
Predicted to be involved in bicellular tight junction assembly and cell adhesion. Located in mitochondrion. Orthologous to human CLDN34 (claudin 34). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in testis adult (RPKM 8.2), whole brain E14.5 (RPKM 2.9) and 15 other tissues See more
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Genomic context

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See Cldn34c5 in Genome Data Viewer
Location:
X E3; X 49.81 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (122925702..122954053)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (124016018..124044356)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene amplified spermatogenic transcripts X encoded 5 Neighboring gene ribosomal protein S12, pseudogene 20 Neighboring gene STARR-seq mESC enhancer starr_47885 Neighboring gene vomeronasal 2, receptor 121 Neighboring gene STARR-seq mESC enhancer starr_47886 Neighboring gene STARR-seq mESC enhancer starr_47887 Neighboring gene ribosomal protein S12, pseudogene 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in biological_process ND
No biological Data available
more info
  
involved_in cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in bicellular tight junction IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in mitochondrion HDA PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein Cldn34c5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    122925702..122954053
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011247722.3 → XP_011246024.1  uncharacterized protein Cldn34c5 isoform X3

  2. XM_006528440.4 → XP_006528503.1  uncharacterized protein Cldn34c5 isoform X1

    UniProtKB/TrEMBL
    Q9CXT3

  3. XM_006528441.4 → XP_006528504.1  uncharacterized protein Cldn34c5 isoform X2

    See identical proteins and their annotated locations for XP_006528504.1

    UniProtKB/TrEMBL
    A0A571BDD5, Q9CXT3
    Related
    ENSMUSP00000158686.1, ENSMUST00000238503.1

  4. XM_006528442.3 → XP_006528505.1  uncharacterized protein Cldn34c5 isoform X2

    See identical proteins and their annotated locations for XP_006528505.1

    UniProtKB/TrEMBL
    A0A571BDD5, Q9CXT3
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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