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PVX_117890 sortilin, putative [ Plasmodium vivax (malaria parasite P. vivax) ]

Gene ID: 5475169, updated on 5-Sep-2024

Summary

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Gene symbol
PVX_117890
Gene description
sortilin, putative
Locus tag
PVX_117890
See related
PlasmoDB:PVX_117890; VEuPathDB:PVX_117890
Gene type
protein coding
RNA name
sortilin, putative
RefSeq status
PROVISIONAL
Organism
Plasmodium vivax (strain: Salvador I)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Plasmodium)
Orthologs
Plasmodium falciparum all
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Genomic context

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See PVX_117890 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
4
Sequence:
Chromosome: 12; NC_009917.1 (2229789..2233220, complement)

Chromosome 12 - NC_009917.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene calcineurin B subunit Neighboring gene PA14 domain containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009917.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Carlton JM, et al. Nature, 2008 Oct 9. PMID 18843361, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in post-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sortilin, putative
XP_001615871.1
  • encoded by transcript PVX_117890A

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009917.1 Reference assembly

    Range
    2229789..2233220 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001615821.1 → XP_001615871.1  sortilin, putative [Plasmodium vivax]

    See identical proteins and their annotated locations for XP_001615871.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0J9SA96, A0A0J9ST80, A0A0J9T9B9, A0A0J9TQ34, A0A1G4HHU3, A5K3P0
    Conserved Domains (2) summary
    pfam15901
    Location:605 → 763
    Sortilin_C; Sortilin, neurotensin receptor 3, C-terminal
    pfam15902
    Location:102 → 602
    Sortilin-Vps10; Sortilin, neurotensin receptor 3,
Nucleotide Protein
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