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ACX1;1 acyl-CoA oxidase [ Glycine max (soybean) ]

Gene ID: 547625, updated on 7-Dec-2023

Summary

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Gene symbol
ACX1;1
Gene description
acyl-CoA oxidase
Locus tag
GLYMA_11G035200v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See ACX1;1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
14
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 11 NC_038247.2 (2542898..2549819, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 11 NC_038247.1 (2548970..2555874, complement)

Chromosome 11 - NC_038247.2Genomic Context describing neighboring genes Neighboring gene putative disease resistance RPP13-like Neighboring gene dehydration-responsive element-binding protein 3 Neighboring gene 2-oxoglutarate-Fe(II) type oxidoreductase hxnY Neighboring gene uncharacterized LOC100527469

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene isolation and characterization of two acyl CoA oxidases from soybean with broad substrate specificities and enhanced expression in the growing seedling axis. Agarwal AK, et al. Plant Mol Biol, 2001 Nov. PMID 11669577
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables acyl-CoA oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fatty acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation using acyl-CoA oxidase IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in long-chain fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acyl-CoA oxidase
NP_001235548.2
XP_025980073.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001248619.2 → NP_001235548.2  acyl-CoA oxidase

    Status: VALIDATED

    Source sequence(s)
    ACUP04003794
    UniProtKB/TrEMBL
    I1LGS5, Q945U4
    Conserved Domains (1) summary
    PLN02443
    Location:4 → 665
    PLN02443; acyl-coenzyme A oxidase

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038247.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    2542898..2549819 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026124288.2 → XP_025980073.1  acyl-CoA oxidase isoform X1

    UniProtKB/TrEMBL
    A0A0R0HNI5, Q945U4
    Conserved Domains (1) summary
    PLN02443
    Location:4 → 666
    PLN02443; acyl-coenzyme A oxidase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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