U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Pcdhb17 protocadherin beta 17 [ Rattus norvegicus (Norway rat) ]

Gene ID: 548104, updated on 27-Nov-2024

Summary

Symbol
Pcdhb17provided by RGD
Full Name
protocadherin beta 17provided by RGD
Primary source
RGD:1549775
See related
EnsemblRapid:ENSRNOG00000039470 AllianceGenome:RGD:1549775
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable calcium ion binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 40.7), Lung (RPKM 21.2) and 9 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Pcdhb17 in Genome Data Viewer
Location:
18p11
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (29470868..29475832)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (29196858..29201822)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (30565817..30570184)

Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene protocadherin beta 16-like Neighboring gene protocadherin beta 16 Neighboring gene protocadherin beta 19 Neighboring gene small nucleolar RNA SNORA31

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
protocadherin beta-16
Names
protocadherin beta-18

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001408905.2NP_001395834.1  protocadherin beta-16 precursor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000018
    UniProtKB/TrEMBL
    A6J374
    Related
    ENSRNOP00000039238.3, ENSRNOT00000040998.4

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086036.1 Reference GRCr8

    Range
    29470868..29475832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001014805.1: Suppressed sequence

    Description
    NM_001014805.1: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.