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sh3d19 SH3 domain containing 19 [ Danio rerio (zebrafish) ]

Gene ID: 553811, updated on 4-Jan-2025

Summary

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Official Symbol
sh3d19provided by ZNC
Official Full Name
SH3 domain containing 19provided by ZNC
Primary source
ZFIN:ZDB-GENE-050522-481
See related
Ensembl:ENSDARG00000088202 AllianceGenome:ZFIN:ZDB-GENE-050522-481
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:113078
Summary
Is expressed in myotome. Orthologous to human SH3D19 (SH3 domain containing 19). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See sh3d19 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (24394169..24462740, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (23703143..23771862, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene quinoid dihydropteridine reductase b, tandem duplicate 2 Neighboring gene quinoid dihydropteridine reductase b, tandem duplicate 3 Neighboring gene FHF complex subunit HOOK interacting protein 1Aa Neighboring gene glutamyl-tRNA(Gln) amidotransferase, subunit B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC113078

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
SH3 domain-containing protein 19

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001020773.2 → NP_001018609.2  SH3 domain-containing protein 19

    Status: VALIDATED

    Source sequence(s)
    BX005068, EH564001
    UniProtKB/TrEMBL
    A0A8M1N6C9, B8A480
    Related
    ENSDARP00000111512.2, ENSDART00000126950.4

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    24394169..24462740 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068219461.1 → XP_068075562.1  SH3 domain-containing protein 19 isoform X2

  2. XM_009291020.4 → XP_009289295.1  SH3 domain-containing protein 19 isoform X1

    UniProtKB/TrEMBL
    A0A8M3B087
    Conserved Domains (3) summary
    cd11816
    Location:809 → 859
    SH3_Eve1_3; Third Src homology 3 domain of ADAM-binding protein Eve-1
    cd11817
    Location:904 → 953
    SH3_Eve1_4; Fourth Src homology 3 domain of ADAM-binding protein Eve-1
    cl17036
    Location:732 → 782
    SH3; Src Homology 3 domain superfamily

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394482.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    267629..336102 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395216.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    132295..171198 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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