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si:ch211-133n4.4 si:ch211-133n4.4 [ Danio rerio (zebrafish) ]

Gene ID: 559260, updated on 4-Jan-2025

Summary

Official Symbol
si:ch211-133n4.4provided by ZNC
Official Full Name
si:ch211-133n4.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-898
See related
Ensembl:ENSDARG00000071224 AllianceGenome:ZFIN:ZDB-GENE-030131-898
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb52d02; wu:fb52d02; zgc:153988
Summary
Predicted to enable hydrolase activity; metal ion binding activity; and nucleic acid binding activity. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See si:ch211-133n4.4 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (3237790..3240579, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (3296892..3299681, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene si:ch211-133n4.6 Neighboring gene zgc:86598 Neighboring gene uncharacterized LOC137488458 Neighboring gene zgc:158445 Neighboring gene immune-related, lectin-like receptor 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Clone Names

  • MGC153988

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC559260

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077376.1NP_001070844.1  uncharacterized protein LOC559260 precursor

    See identical proteins and their annotated locations for NP_001070844.1

    Status: PREDICTED

    Source sequence(s)
    BC124785
    UniProtKB/TrEMBL
    A0A8M1NBL9, Q08BC3
    Related
    ENSDARP00000095939.4, ENSDART00000105168.5
    Conserved Domains (1) summary
    smart00892
    Location:67225
    Endonuclease_NS; DNA/RNA non-specific endonuclease

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    3237790..3240579 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)