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znf142 zinc finger protein 142 [ Danio rerio (zebrafish) ]

Gene ID: 561536, updated on 4-Jan-2025

Summary

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Official Symbol
znf142provided by ZNC
Official Full Name
zinc finger protein 142provided by ZNC
Primary source
ZFIN:ZDB-GENE-080512-2
See related
Ensembl:ENSDARG00000061373 AllianceGenome:ZFIN:ZDB-GENE-080512-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in telencephalon. Orthologous to human ZNF142 (zinc finger protein 142). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See znf142 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (38390000..38399430, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (38580206..38589645, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 93 Neighboring gene phospholipase C, delta 4b Neighboring gene BC1 (ubiquinol-cytochrome c reductase) synthesis-like Neighboring gene cytochrome P450, family 27, subfamily A, polypeptide 1.1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. microRNA-206 modulates an Rtn4a/Cxcr4a/Thbs3a axis in newly forming somites to maintain and stabilize the somite boundary formation of zebrafish embryos. Lin CY, et al. Open Biol, 2017 Jul. PMID 28701377, Free PMC Article
  2. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 142

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    38390000..38399430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_684944.9 → XP_690036.3  zinc finger protein 142

    UniProtKB/TrEMBL
    A0A8N7UVU4, E9QCQ3
    Related
    ENSDARP00000116080.1, ENSDART00000148268.2
    Conserved Domains (3) summary
    COG5048
    Location:80 → 503
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:1411 → 1431
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:1078 → 1098
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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