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si:dkey-32e6.6 si:dkey-32e6.6 [ Danio rerio (zebrafish) ]

Gene ID: 561688, updated on 27-Dec-2024

Summary

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Official Symbol
si:dkey-32e6.6provided by ZNC
Official Full Name
si:dkey-32e6.6provided by ZNC
Primary source
ZFIN:ZDB-GENE-081031-90
See related
Ensembl:ENSDARG00000070857 AllianceGenome:ZFIN:ZDB-GENE-081031-90
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See si:dkey-32e6.6 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (20068816..20100497, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (20142267..20174516, complement)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3 Neighboring gene biglycan b Neighboring gene troponin C type 1b (slow) Neighboring gene transketolase b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Proteomics analysis of the zebrafish skeletal extracellular matrix. Kessels MY, et al. PLoS One, 2014. PMID 24608635, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
extracellular matrix protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    20068816..20100497 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_685097.8 → XP_690189.3  extracellular matrix protein 2

    UniProtKB/TrEMBL
    A0A8N7T744
    Related
    ENSDARP00000123291.1, ENSDART00000143445.2
    Conserved Domains (3) summary
    cd00116
    Location:175 → 400
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:203 → 226
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:202 → 263
    LRR_8; Leucine rich repeat
Nucleotide Protein Strain
Heading Accession and Version

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