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LOC563292 zinc finger Y-chromosomal protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 563292, updated on 17-Sep-2024

Summary

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Gene symbol
LOC563292
Gene description
zinc finger Y-chromosomal protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See LOC563292 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (4435378..4470762)
105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_003051371.3 (11573..47086, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene apolipoprotein O, a Neighboring gene expressed sequence EE300746 Neighboring gene zgc:153704 Neighboring gene cystatin 14b, tandem duplicate 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
zinc finger Y-chromosomal protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    4435378..4470762
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_686657.10 → XP_691749.6  zinc finger Y-chromosomal protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8N7UR26
    Conserved Domains (5) summary
    COG5048
    Location:463 → 518
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:467 → 487
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:692 → 713
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam04704
    Location:43 → 313
    Zfx_Zfy_act; Zfx / Zfy transcription activation region
    cl19880
    Location:330 → 360
    ROS_MUCR; ROS/MUCR transcriptional regulator protein

  2. XM_005170809.5 → XP_005170866.1  zinc finger Y-chromosomal protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M2BI45
    Conserved Domains (7) summary
    COG5048
    Location:332 → 625
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:466 → 486
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:691 → 712
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:464 → 486
    zf-C2H2; Zinc finger, C2H2 type
    pfam04704
    Location:43 → 312
    Zfx_Zfy_act; Zfx / Zfy transcription activation region
    pfam13465
    Location:478 → 500
    zf-H2C2_2; Zinc-finger double domain
    cl19880
    Location:329 → 359
    ROS_MUCR; ROS/MUCR transcriptional regulator protein
Nucleotide Protein Strain
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