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si:ch211-89o9.4 si:ch211-89o9.4 [ Danio rerio (zebrafish) ]

Gene ID: 566247, updated on 4-Jan-2025

Summary

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Official Symbol
si:ch211-89o9.4provided by ZNC
Official Full Name
si:ch211-89o9.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-090313-134
See related
Ensembl:ENSDARG00000093237 AllianceGenome:ZFIN:ZDB-GENE-090313-134
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-89o9.2; si:ch211-89o9.3
Summary
Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See si:ch211-89o9.4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (41454195..41463675)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (40751408..40760888)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene regulator of G protein signaling 12b Neighboring gene huntingtin Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene poly(A) binding protein interacting protein 2B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of RNA splicing IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC566247

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145593.2 → NP_001139065.2  uncharacterized protein LOC566247

    Status: PREDICTED

    Source sequence(s)
    BX511019
    UniProtKB/TrEMBL
    A0A8M1NT77, F6NS95
    Related
    ENSDARP00000122761.2, ENSDART00000148251.4
    Conserved Domains (1) summary
    cl17169
    Location:418 → 492
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    41454195..41463675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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