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zmym2 zinc finger, MYM-type 2 [ Danio rerio (zebrafish) ]

Gene ID: 570149, updated on 4-Jan-2025

Summary

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Official Symbol
zmym2provided by ZNC
Official Full Name
zinc finger, MYM-type 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-2408
See related
Ensembl:ENSDARG00000027353 AllianceGenome:ZFIN:ZDB-GENE-030131-2408
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc07a10; wu:fc07a10; si:dkey-51d17.6
Summary
Predicted to enable zinc ion binding activity. Is expressed in telencephalon. Orthologous to human ZMYM2 (zinc finger MYM-type containing 2). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See zmym2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (21429841..21460162, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (21618960..21649327, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene gap junction protein, alpha 3 Neighboring gene uncharacterized LOC137490349 Neighboring gene M-phase phosphoprotein 8 Neighboring gene AF4/FMR2 family, member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger MYM-type protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    21429841..21460162 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068223591.1 → XP_068079692.1  zinc finger MYM-type protein 2 isoform X2

  2. XM_001923537.8 → XP_001923572.4  zinc finger MYM-type protein 2 isoform X1

    See identical proteins and their annotated locations for XP_001923572.4

    UniProtKB/TrEMBL
    A0A8M1QLS3, B0S766
    Related
    ENSDARP00000114731.1, ENSDART00000133469.2
    Conserved Domains (2) summary
    pfam06467
    Location:452 → 495
    zf-FCS; MYM-type Zinc finger with FCS sequence motif
    pfam12012
    Location:1173 → 1341
    DUF3504; Domain of unknown function (DUF3504)

  3. XM_068223590.1 → XP_068079691.1  zinc finger MYM-type protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8M1QLS3, B0S766

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394749.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    295533..305741 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472153.2 → XP_021327828.1  zinc finger MYM-type protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8M9PLC8
    Conserved Domains (1) summary
    pfam12012
    Location:347 → 515
    DUF3504; Domain of unknown function (DUF3504)

  2. XM_021472152.2 → XP_021327827.1  zinc finger MYM-type protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8M9PA17
    Conserved Domains (1) summary
    pfam12012
    Location:348 → 516
    DUF3504; Domain of unknown function (DUF3504)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394750.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    4..20107 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472159.2 → XP_021327834.1  zinc finger MYM-type protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A8M9PSG9
    Conserved Domains (2) summary
    pfam06467
    Location:604 → 641
    zf-FCS; MYM-type Zinc finger with FCS sequence motif
    cl00909
    Location:692 → 728
    Ribosomal_L24e_L24; Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor ...
Nucleotide Protein Strain
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