U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rpap1 RNA polymerase II associated protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 570666, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
rpap1provided by ZNC
Official Full Name
RNA polymerase II associated protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-090914-1
See related
Ensembl:ENSDARG00000075072 AllianceGenome:ZFIN:ZDB-GENE-090914-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to act upstream of or within transcription by RNA polymerase II. Orthologous to human RPAP1 (RNA polymerase II associated protein 1). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See rpap1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (31535808..31579696, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (31518845..31562743, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene inositol-trisphosphate 3-kinase A Neighboring gene leukocyte receptor tyrosine kinase Neighboring gene si:dkey-13p1.4 Neighboring gene HEAT repeat containing 4

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Revealing genes associated with vitellogenesis in the liver of the zebrafish (Danio rerio) by transcriptome profiling. Levi L, et al. BMC Genomics, 2009 Mar 31. PMID 19335895, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
RNA polymerase II-associated protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    31535808..31579696 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003200358.5 → XP_003200406.2  RNA polymerase II-associated protein 1

    UniProtKB/TrEMBL
    A0A8M9PPB9, E7FGQ5
    Related
    ENSDARP00000100448.2, ENSDART00000110167.4
    Conserved Domains (2) summary
    pfam08620
    Location:376 → 442
    RPAP1_C; RPAP1-like, C-terminal
    pfam08621
    Location:233 → 276
    RPAP1_N; RPAP1-like, N-terminal

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394997.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    437720..481782 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473203.2 → XP_021328878.1  RNA polymerase II-associated protein 1

    UniProtKB/TrEMBL
    A0A8M9PPB9, E7FGQ5
    Conserved Domains (2) summary
    pfam08620
    Location:376 → 442
    RPAP1_C; RPAP1-like, C-terminal
    pfam08621
    Location:233 → 276
    RPAP1_N; RPAP1-like, N-terminal
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.