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zgc:162816 zgc:162816 [ Danio rerio (zebrafish) ]

Gene ID: 571260, updated on 27-Dec-2024

Summary

Official Symbol
zgc:162816provided by ZNC
Official Full Name
zgc:162816provided by ZNC
Primary source
ZFIN:ZDB-GENE-070410-94
See related
Ensembl:ENSDARG00000070416 AllianceGenome:ZFIN:ZDB-GENE-070410-94
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
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Genomic context

See zgc:162816 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (31609428..31621675)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (31346398..31358615)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496713 Neighboring gene egl-9 family hypoxia-inducible factor 1b Neighboring gene hyccin 2 Neighboring gene diaphanous-related formin 3

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
uncharacterized protein LOC571260

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001430897.1NP_001417826.1  uncharacterized protein LOC571260

    Status: VALIDATED

    Source sequence(s)
    CU929323, FO704610
    UniProtKB/TrEMBL
    A0A8M3BDT3
    Related
    ENSDARP00000109902.2, ENSDART00000124830.3

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    31609428..31621675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001089489.1: Suppressed sequence

    Description
    NM_001089489.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.