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mrpl9 mitochondrial ribosomal protein L9 [ Danio rerio (zebrafish) ]

Gene ID: 572170, updated on 4-Jan-2025

Summary

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Official Symbol
mrpl9provided by ZNC
Official Full Name
mitochondrial ribosomal protein L9provided by ZNC
Primary source
ZFIN:ZDB-GENE-070717-4
See related
Ensembl:ENSDARG00000063249 AllianceGenome:ZFIN:ZDB-GENE-070717-4
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:6902315; wu:fa98b03; si:ch211-210h11.9
Summary
Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex. Predicted to be active in mitochondrion. Orthologous to human MRPL9 (mitochondrial ribosomal protein L9). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See mrpl9 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (7518867..7525403, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (7599942..7606478, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene proline rich mitotic checkpoint control factor Neighboring gene uncharacterized LOC137488469 Neighboring gene uncharacterized LOC137488468 Neighboring gene limb and CNS expressed 1 like Neighboring gene pre-B-cell leukemia homeobox interacting protein 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
large ribosomal subunit protein bL9m

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100044.2 → NP_001093514.2  large ribosomal subunit protein bL9m

    See identical proteins and their annotated locations for NP_001093514.2

    Status: PROVISIONAL

    Source sequence(s)
    BC153667
    UniProtKB/TrEMBL
    A8E5P5
    Related
    ENSDARP00000086688.5, ENSDART00000092256.6
    Conserved Domains (2) summary
    PRK00137
    Location:80 → 212
    rplI; 50S ribosomal protein L9; Reviewed
    pfam01281
    Location:81 → 126
    Ribosomal_L9_N; Ribosomal protein L9, N-terminal domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    7518867..7525403 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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