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dpaA peptidoglycan meso-diaminopimelic acid protein amidase [ Pectobacterium brasiliense ]

Gene ID: 57243292, updated on 31-Mar-2024

Summary

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Gene symbol
dpaA
Gene description
peptidoglycan meso-diaminopimelic acid protein amidase
Locus tag
GT391_RS12185
Gene type
protein coding
Organism
Pectobacterium brasiliense (strain: 1692, nat-host: potato)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Pectobacterium
Old locus tag
GT391_12185
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Genomic context

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NZ_CP047495.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA dehydrogenase FadE Neighboring gene class II glutamine amidotransferase Neighboring gene D-sedoheptulose 7-phosphate isomerase Neighboring gene class I SAM-dependent methyltransferase Neighboring gene helix-turn-helix transcriptional regulator

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP047495.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cleavage of Braun's lipoprotein Lpp from the bacterial peptidoglycan by a paralog of l,d-transpeptidases, LdtF. Bahadur R, et al. Proc Natl Acad Sci U S A, 2021 May 11. PMID 33941679, Free PMC Article
  2. DpaA Detaches Braun's Lipoprotein from Peptidoglycan. Winkle M, et al. mBio, 2021 May 4. PMID 33947763, Free PMC Article
  3. Complete Genome Sequence of the Necrotrophic Plant-Pathogenic Bacterium Pectobacterium brasiliense 1692. Liu Y, et al. Microbiol Resour Announc, 2020 Mar 19. PMID 32193231, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
peptidoglycan meso-diaminopimelic acid protein amidase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP047495.1 Reference assembly

    Range
    2726152..2726886 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_010282566.1 MULTISPECIES: peptidoglycan meso-diaminopimelic acid protein amidase [Pectobacterium]

    See identical proteins and their annotated locations for WP_010282566.1

    UniProtKB/TrEMBL
    A0A0M2EXX8
    Conserved Domains (1) summary
    COG3034
    Location:1 → 231
    YafK; Murein L,D-transpeptidase YafK [Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
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