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BC051019 cDNA sequence BC051019 [ Mus musculus (house mouse) ]

Gene ID: 57355, updated on 27-Nov-2024

Summary

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Official Symbol
BC051019provided by MGI
Official Full Name
cDNA sequence BC051019provided by MGI
Primary source
MGI:MGI:1928824
See related
Ensembl:ENSMUSG00000031022 AllianceGenome:MGI:1928824
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D7H11orf16; ICRFP703B1614Q5.5
Summary
Orthologous to human C11orf16 (chromosome 11 open reading frame 16). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in lung adult (RPKM 6.9), bladder adult (RPKM 5.4) and 2 other tissues See more
Orthologs
human all
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Genomic context

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See BC051019 in Genome Data Viewer
Location:
7 E3; 7 57.45 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (109311388..109323141, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (109712181..109723934, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 24888 Neighboring gene ribosomal protein L27A Neighboring gene DENN domain containing 2B Neighboring gene STARR-seq mESC enhancer starr_19802 Neighboring gene STARR-seq mESC enhancer starr_19804 Neighboring gene STARR-positive B cell enhancer ABC_E4965 Neighboring gene VISTA enhancer mm1407 Neighboring gene A kinase interacting protein 1 Neighboring gene predicted gene, 51493 Neighboring gene achaete-scute family bHLH transcription factor 3 Neighboring gene TMEM9 domain family, member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Comparative genomic sequencing reveals a strikingly similar architecture of a conserved syntenic region on human chromosome 11p15.3 (including gene ST5) and mouse chromosome 7. Amid C, et al. Cytogenet Cell Genet, 2001. PMID 11528127
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C11orf16 homolog
Names
ICRFP703N2430Q5.5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001040700.2 → NP_001035790.1  uncharacterized protein C11orf16 homolog

    See identical proteins and their annotated locations for NP_001035790.1

    Status: PROVISIONAL

    Source sequence(s)
    BC051019
    Consensus CDS
    CCDS40084.1
    UniProtKB/Swiss-Prot
    Q80XE7, Q9JJR6
    UniProtKB/TrEMBL
    Q3UQ01
    Related
    ENSMUSP00000102346.3, ENSMUST00000106735.9
    Conserved Domains (1) summary
    pfam15057
    Location:85 → 223
    DUF4537; Domain of unknown function (DUF4537)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    109311388..109323141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006508052.4 → XP_006508115.1  uncharacterized protein C11orf16 homolog isoform X1

    See identical proteins and their annotated locations for XP_006508115.1

    UniProtKB/Swiss-Prot
    Q80XE7, Q9JJR6
    UniProtKB/TrEMBL
    Q3UQ01
    Related
    ENSMUSP00000033334.5, ENSMUST00000033334.5
    Conserved Domains (1) summary
    pfam15057
    Location:85 → 223
    DUF4537; Domain of unknown function (DUF4537)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_020609.2: Suppressed sequence

    Description
    NM_020609.2: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9JJR6.2 GenPept UniProtKB/Swiss-Prot:Q9JJR6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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