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PTGER4P2 prostaglandin E receptor 4 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 5736, updated on 10-Dec-2024

Summary

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Official Symbol
PTGER4P2provided by HGNC
Official Full Name
prostaglandin E receptor 4 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:9598
See related
AllianceGenome:HGNC:9598
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See PTGER4P2 in Genome Data Viewer
Location:
9q13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (62843789..62844171)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (80337786..80338168, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (66499613..66499995)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987020 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66457923-66458800 Neighboring gene long intergenic non-protein coding RNA 1410 Neighboring gene RNA, 5S ribosomal pseudogene 283 Neighboring gene OCT4 hESC enhancer GRCh37_chr9:66464814-66465421 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:66470759-66471281 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:66478631-66479190 Neighboring gene PTGER4P2-CDK2AP2P2 readthrough, transcribed pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66486627-66487478 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66489090-66489619 Neighboring gene uncharacterized LOC100132249 Neighboring gene MPRA-validated peak7249 silencer Neighboring gene Sharpr-MPRA regulatory region 15656 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19925 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66500322-66500855 Neighboring gene cyclin dependent kinase 2 associated protein 2 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:66508451-66508950 Neighboring gene myosin VB pseudogene 2 Neighboring gene lncRNA negative regulator of fibroblast-like synoviocyte migration, SYNCRIP interacting

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • prostaglandin E receptor 4 (subtype EP4) pseudogene 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_046646.1 

    Range
    101..483
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    62843789..62844171
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    80337786..80338168 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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