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CLLU1-AS1 CLLU1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 574016, updated on 10-Dec-2024

Summary

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Official Symbol
CLLU1-AS1provided by HGNC
Official Full Name
CLLU1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:24070
See related
Ensembl:ENSG00000205057 MIM:616989; AllianceGenome:HGNC:24070
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CLLU1OS
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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See CLLU1-AS1 in Genome Data Viewer
Location:
12q22
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (92420086..92432999, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (92397564..92410484, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (92813862..92826775, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2391 Neighboring gene uncharacterized LOC105369902 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6730 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6731 Neighboring gene CRISPRi-validated cis-regulatory element chr12.2878 Neighboring gene uncharacterized LOC107984467 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6732 Neighboring gene CRISPRi-validated cis-regulatory element chr12.2880 Neighboring gene CRISPRi-validated cis-regulatory element chr12.2881 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6734 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6736 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6735 Neighboring gene chronic lymphocytic leukemia up-regulated 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6737 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6738 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6739 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6740 Neighboring gene Sharpr-MPRA regulatory region 8533 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6742 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6743 Neighboring gene long intergenic non-protein coding RNA 2397 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6744 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6745 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6746 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6747 Neighboring gene uncharacterized LOC105369904

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Identification of a gene on chromosome 12q22 uniquely overexpressed in chronic lymphocytic leukemia. Buhl AM, et al. Blood, 2006 Apr 1. PMID 16339396
  2. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Other Names

  • chronic lymphocytic leukemia up-regulated 1 opposite strand
  • chronic lymphocytic leukemia up-regulated 1 overlapping strand
  • putative chronic lymphocytic leukemia up-regulated protein 1 opposite strand transcript protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_144319.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC063949

  2. NR_164161.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC063949
    Related
    ENST00000646751.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    92420086..92432999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    92397564..92410484 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001025232.1: Suppressed sequence

    Description
    NM_001025232.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5K130.1 GenPept UniProtKB/Swiss-Prot:Q5K130

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials